3D structure

PDB id
8IFC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Arbekacin-bound E.coli 70S ribosome in the PURE system
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
8IFC|1|a|A|1127, 8IFC|1|a|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IFC_107 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.0626
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

8IFC|1|a|G|1024
8IFC|1|a|G|1025
8IFC|1|a|G|1026
8IFC|1|a|A|1027
8IFC|1|a|A|1028
8IFC|1|a|A|1029
8IFC|1|a|C|1030
*
8IFC|1|a|G|1124
8IFC|1|a|G|1125
8IFC|1|a|A|1126
8IFC|1|a|A|1127
8IFC|1|a|G|1128
8IFC|1|a|A|1129
8IFC|1|a|U|1130
8IFC|1|a|G|1131
8IFC|1|a|U|1132
8IFC|1|a|A|1133
8IFC|1|a|A|1134
8IFC|1|a|C|1135
8IFC|1|a|G|1136
8IFC|1|a|G|1137
8IFC|1|a|G|1138
8IFC|1|a|G|1139
8IFC|1|a|C|1140

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein L36
Chain d
50S ribosomal protein L3
Chain i
50S ribosomal protein L13
Chain l
50S ribosomal protein L16

Coloring options:


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