IL_8IFC_158

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFC_158 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.0849

The information below is about IL_5J7L_338

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8IFC|1|a|C|2466
8IFC|1|a|C|2467
8IFC|1|a|A|2468
8IFC|1|a|A|2469
8IFC|1|a|G|2470
*
8IFC|1|a|C|2480
8IFC|1|a|G|2481
8IFC|1|a|A|2482
8IFC|1|a|C|2483
8IFC|1|a|G|2484

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain 5

Transfer RNA; tRNA

Chain l

50S ribosomal protein L16