3D structure

PDB id
8IFC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Arbekacin-bound E.coli 70S ribosome in the PURE system
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UGUAAG*UUGAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IFC_175 not in the Motif Atlas
Homologous match to IL_5J7L_354
Geometric discrepancy: 0.0649
The information below is about IL_5J7L_354
Detailed Annotation
tHS double platform
Broad Annotation
No text annotation
Motif group
IL_70411.2
Basepair signature
cWW-tSH-L-tHH-L-cWW
Number of instances in this motif group
7

Unit IDs

8IFC|1|a|U|2847
8IFC|1|a|G|2848
8IFC|1|a|U|2849
8IFC|1|a|A|2850
8IFC|1|a|A|2851
8IFC|1|a|G|2852
*
8IFC|1|a|U|2865
8IFC|1|a|U|2866
8IFC|1|a|G|2867
8IFC|1|a|A|2868
8IFC|1|a|G|2869

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain m
50S ribosomal protein L17
Chain o
50S ribosomal protein L19

Coloring options:


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