IL_8IFC_184

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

8IFC|1|a|U|846, 8IFC|1|a|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFC_184 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.1322

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

8IFC|1|a|A|844
8IFC|1|a|A|845
8IFC|1|a|U|846
8IFC|1|a|U|847
8IFC|1|a|C|848
*
8IFC|1|a|G|930
8IFC|1|a|U|931
8IFC|1|a|U|932
8IFC|1|a|A|933
8IFC|1|a|U|934

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain y

50S ribosomal protein L30