IL_8IFD_004

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_004 not in the Motif Atlas

Homologous match to IL_8C3A_004

Geometric discrepancy: 0.1428

The information below is about IL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

8IFD|1|1A|C|26
8IFD|1|1A|C|27
*
8IFD|1|1A|G|55
8IFD|1|1A|A|56
8IFD|1|1A|G|57

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1C

5.8S ribosomal RNA; 5.8S rRNA

Chain 2F

60S ribosomal protein L13

Chain 2H

60S ribosomal protein L15

Chain 2b

60S ribosomal protein L35

Chain 2d

60S ribosomal protein L37