IL_8IFD_011

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GCUCGUGG*CGGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|1A|G|182
8IFD|1|1A|C|183
8IFD|1|1A|U|184
8IFD|1|1A|C|185
8IFD|1|1A|G|186
8IFD|1|1A|U|187
8IFD|1|1A|G|188
8IFD|1|1A|G|189
*
8IFD|1|1A|C|252
8IFD|1|1A|G|253
8IFD|1|1A|G|254
8IFD|1|1A|C|255

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1C

5.8S ribosomal RNA; 5.8S rRNA

Chain 2F

60S ribosomal protein L13

Chain 2d

60S ribosomal protein L37