IL_8IFD_017
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IFD_017 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0811
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8IFD|1|1A|G|415
8IFD|1|1A|U|416
8IFD|1|1A|G|417
8IFD|1|1A|A|418
8IFD|1|1A|A|419
8IFD|1|1A|A|420
8IFD|1|1A|C|421
*
8IFD|1|1C|G|13
8IFD|1|1C|U|14
8IFD|1|1C|G|15
8IFD|1|1C|G|16
8IFD|1|1C|A|17
8IFD|1|1C|U|18
8IFD|1|1C|C|19
Current chains
- Chain 1A
- 28S ribosomal RNA
- Chain 1C
- 5.8S ribosomal RNA
Nearby chains
- Chain 1F
- 60S ribosomal protein L4
- Chain 2J
- 60S ribosomal protein L17
- Chain 2Y
- 60S ribosomal protein L32
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