IL_8IFD_018
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GGUC*GCUAC
- Length
- 9 nucleotides
- Bulged bases
- 8IFD|1|1A|C|1301
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IFD_018 not in the Motif Atlas
- Geometric match to IL_4PHY_003
- Geometric discrepancy: 0.3656
- The information below is about IL_4PHY_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49140.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
8IFD|1|1A|G|443
8IFD|1|1A|G|444
8IFD|1|1A|U|445
8IFD|1|1A|C|446
*
8IFD|1|1A|G|1300
8IFD|1|1A|C|1301
8IFD|1|1A|U|1302
8IFD|1|1A|A|1303
8IFD|1|1A|C|1304
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 2Y
- 60S ribosomal protein L32
- Chain 2Z
- 60S ribosomal protein L35a
Coloring options: