IL_8IFD_033

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

AAGG*CAGCAGCACU

Length

14 nucleotides

Bulged bases

8IFD|1|1A|A|932, 8IFD|1|1A|C|934, 8IFD|1|1A|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|1A|A|732
8IFD|1|1A|A|733
8IFD|1|1A|G|734
8IFD|1|1A|G|735
*
8IFD|1|1A|C|928
8IFD|1|1A|A|929
8IFD|1|1A|G|930
8IFD|1|1A|C|931
8IFD|1|1A|A|932
8IFD|1|1A|G|933
8IFD|1|1A|C|934
8IFD|1|1A|A|935
8IFD|1|1A|C|936
8IFD|1|1A|U|937

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1F

60S ribosomal protein L4

Chain 2G

60S ribosomal protein L14

Chain 2M

60S ribosomal protein L18a