IL_8IFD_041

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CUC*GCCCGG

Length

9 nucleotides

Bulged bases

8IFD|1|1A|C|1214, 8IFD|1|1A|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|1A|C|1082
8IFD|1|1A|U|1083
8IFD|1|1A|C|1084
*
8IFD|1|1A|G|1213
8IFD|1|1A|C|1214
8IFD|1|1A|C|1215
8IFD|1|1A|C|1216
8IFD|1|1A|G|1217
8IFD|1|1A|G|1218

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2A

60S ribosomal protein L7

Chain 2V

60S ribosomal protein L29