IL_8IFD_049

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

8IFD|1|1A|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_049 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1686

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8IFD|1|1A|G|1360
8IFD|1|1A|G|1361
*
8IFD|1|1A|C|1376
8IFD|1|1A|G|1377
8IFD|1|1A|C|1378
8IFD|1|1A|C|1379

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1F

60S ribosomal protein L4

Chain 2F

60S ribosomal protein L13

Chain 2H

60S ribosomal protein L15