IL_8IFD_050

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGC,GCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_050 not in the Motif Atlas

Geometric match to IL_5TBW_027

Geometric discrepancy: 0.2125

The information below is about IL_5TBW_027

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8IFD|1|1A|G|1403
8IFD|1|1A|G|1404
8IFD|1|1A|C|1405
*
8IFD|1|1A|G|1412
8IFD|1|1A|C|1413
8IFD|1|1A|C|1414

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2U

60S ribosomal protein L27a

Chain 2V

60S ribosomal protein L29