IL_8IFD_073

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GUCU*AAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_073 not in the Motif Atlas

Geometric match to IL_4V9F_053

Geometric discrepancy: 0.3817

The information below is about IL_4V9F_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49140.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

8IFD|1|1A|G|1753
8IFD|1|1A|U|1754
8IFD|1|1A|C|1755
8IFD|1|1A|U|1756
*
8IFD|1|1A|A|1775
8IFD|1|1A|A|1776
8IFD|1|1A|C|1777

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1G

60S ribosomal protein L5

Chain 2D

60S ribosomal protein L10-like