IL_8IFD_084

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UAUAGACAGCAGG*CUGCCGAA

Length

21 nucleotides

Bulged bases

8IFD|1|1A|U|1959, 8IFD|1|1A|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|1A|U|1957
8IFD|1|1A|A|1958
8IFD|1|1A|U|1959
8IFD|1|1A|A|1960
8IFD|1|1A|G|1961
8IFD|1|1A|A|1962
8IFD|1|1A|C|1963
8IFD|1|1A|A|1964
8IFD|1|1A|G|1965
8IFD|1|1A|C|1966
8IFD|1|1A|A|1967
8IFD|1|1A|G|1968
8IFD|1|1A|G|1969
*
8IFD|1|1A|C|2019
8IFD|1|1A|U|2020
8IFD|1|1A|G|2021
8IFD|1|1A|C|2022
8IFD|1|1A|C|2023
8IFD|1|1A|G|2024
8IFD|1|1A|A|2025
8IFD|1|1A|A|2026

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2g

Large ribosomal subunit protein eL40