IL_8IFD_087

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

8IFD|1|1A|A|2300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_087 not in the Motif Atlas

Homologous match to IL_8C3A_062

Geometric discrepancy: 0.5331

The information below is about IL_8C3A_062

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8IFD|1|1A|G|2299
8IFD|1|1A|A|2300
8IFD|1|1A|G|2301
*
8IFD|1|1A|C|2334
8IFD|1|1A|C|2335

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1C

5.8S ribosomal RNA; 5.8S rRNA

Chain 1F

60S ribosomal protein L4

Chain 2Y

60S ribosomal protein L32

Chain 2k

60S ribosomal protein L28