IL_8IFD_094

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGGC*GCCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGGC,GCCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_094 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2994

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8IFD|1|1A|G|2479
8IFD|1|1A|G|2480
8IFD|1|1A|G|2481
8IFD|1|1A|C|2482
*
8IFD|1|1A|G|2496
8IFD|1|1A|C|2497
8IFD|1|1A|C|2498
8IFD|1|1A|C|2499

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1C

5.8S ribosomal RNA; 5.8S rRNA

Chain 2R

60S ribosomal protein L23a