IL_8IFD_117

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GUCAAAGU*AAUGAAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|1A|G|3714
8IFD|1|1A|U|3715
8IFD|1|1A|C|3716
8IFD|1|1A|A|3717
8IFD|1|1A|A|3718
8IFD|1|1A|A|3719
8IFD|1|1A|G|3720
8IFD|1|1A|U|3721
*
8IFD|1|1A|A|3732
8IFD|1|1A|A|3733
8IFD|1|1A|U|3734
8IFD|1|1A|G|3735
8IFD|1|1A|A|3736
8IFD|1|1A|A|3737
8IFD|1|1A|G|3738
8IFD|1|1A|C|3739

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1D

60S ribosomal protein L8

Chain 2c

60S ribosomal protein L36