IL_8IFD_139

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

8IFD|1|1A|A|4518, 8IFD|1|1A|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_139 not in the Motif Atlas

Homologous match to IL_8C3A_117

Geometric discrepancy: 0.0729

The information below is about IL_8C3A_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8IFD|1|1A|C|4458
8IFD|1|1A|U|4459
*
8IFD|1|1A|A|4517
8IFD|1|1A|A|4518
8IFD|1|1A|C|4519
8IFD|1|1A|G|4520

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2P

60S ribosomal protein L23