IL_8IFD_155

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GAAACG*CUCGCC

Length

12 nucleotides

Bulged bases

8IFD|1|1A|C|4895

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|1A|G|4891
8IFD|1|1A|A|4892
8IFD|1|1A|A|4893
8IFD|1|1A|A|4894
8IFD|1|1A|C|4895
8IFD|1|1A|G|4896
*
8IFD|1|1A|C|4924
8IFD|1|1A|U|4925
8IFD|1|1A|C|4926
8IFD|1|1A|G|4927
8IFD|1|1A|C|4928
8IFD|1|1A|C|4929

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1H

60S ribosomal protein L6

Chain 2G

60S ribosomal protein L14

Chain 2I

60S ribosomal protein L13a