IL_8IFD_161

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UCGUACG*UUGAAA

Length

13 nucleotides

Bulged bases

8IFD|1|1A|G|5041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|1A|U|5003
8IFD|1|1A|C|5004
8IFD|1|1A|G|5005
8IFD|1|1A|U|5006
8IFD|1|1A|A|5007
8IFD|1|1A|C|5008
8IFD|1|1A|G|5009
*
8IFD|1|1A|U|5039
8IFD|1|1A|U|5040
8IFD|1|1A|G|5041
8IFD|1|1A|A|5042
8IFD|1|1A|A|5043
8IFD|1|1A|A|5044

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2Q

60S ribosomal protein L24

Chain 2X

60S ribosomal protein L31