IL_8IFD_163
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CA*UCG
- Length
- 5 nucleotides
- Bulged bases
- 8IFD|1|1B|C|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IFD_163 not in the Motif Atlas
- Homologous match to IL_8C3A_143
- Geometric discrepancy: 0.1408
- The information below is about IL_8C3A_143
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 112
Unit IDs
8IFD|1|1B|C|15
8IFD|1|1B|A|16
*
8IFD|1|1B|U|62
8IFD|1|1B|C|63
8IFD|1|1B|G|64
Current chains
- Chain 1B
- 5S ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- 60S ribosomal protein L5
- Chain 2D
- 60S ribosomal protein L10-like
- Chain 2E
- 60S ribosomal protein L11
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