IL_8IFD_174
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CAAA*UGACG
- Length
- 9 nucleotides
- Bulged bases
- 8IFD|1|2m|A|516
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IFD_174 not in the Motif Atlas
- Geometric match to IL_4WF9_016
- Geometric discrepancy: 0.3217
- The information below is about IL_4WF9_016
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
8IFD|1|2m|C|37
8IFD|1|2m|A|38
8IFD|1|2m|A|39
8IFD|1|2m|A|40
*
8IFD|1|2m|U|514
8IFD|1|2m|G|515
8IFD|1|2m|A|516
8IFD|1|2m|C|517
8IFD|1|2m|G|518
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2q
- 40S ribosomal protein S4, X isoform
- Chain 3I
- 40S ribosomal protein S9
- Chain 3N
- 40S ribosomal protein S24
Coloring options: