IL_8IFD_181

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

8IFD|1|2m|G|113, 8IFD|1|2m|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_181 not in the Motif Atlas

Homologous match to IL_8C3A_400

Geometric discrepancy: 0.0924

The information below is about IL_8C3A_400

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8IFD|1|2m|U|112
8IFD|1|2m|G|113
8IFD|1|2m|G|114
8IFD|1|2m|U|115
*
8IFD|1|2m|A|348
8IFD|1|2m|A|349

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2q

40S ribosomal protein S4, X isoform

Chain 2t

40S ribosomal protein S8

Chain 2v

40S ribosomal protein S11