IL_8IFD_193

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_193 not in the Motif Atlas

Homologous match to IL_8C3A_414

Geometric discrepancy: 0.13

The information below is about IL_8C3A_414

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_42997.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

8IFD|1|2m|C|459
8IFD|1|2m|A|460
8IFD|1|2m|U|461
*
8IFD|1|2m|A|468
8IFD|1|2m|A|469
8IFD|1|2m|G|470

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2P

60S ribosomal protein L23

Chain 3H

40S ribosomal protein S6