IL_8IFD_200

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

8IFD|1|2m|A|590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_200 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.2213

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8IFD|1|2m|G|563
8IFD|1|2m|A|564
8IFD|1|2m|G|565
*
8IFD|1|2m|C|585
8IFD|1|2m|G|586
8IFD|1|2m|A|587
8IFD|1|2m|G|588
8IFD|1|2m|G|589
8IFD|1|2m|A|590
8IFD|1|2m|U|591
8IFD|1|2m|C|592

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3I

40S ribosomal protein S9

Chain 3Q

40S ribosomal protein S30