IL_8IFD_214

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

8IFD|1|2m|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_214 not in the Motif Atlas

Geometric match to IL_3SJ2_002

Geometric discrepancy: 0.2461

The information below is about IL_3SJ2_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8IFD|1|2m|G|925
8IFD|1|2m|A|926
8IFD|1|2m|C|927
*
8IFD|1|2m|G|1014
8IFD|1|2m|U|1015
8IFD|1|2m|U|1016
8IFD|1|2m|U|1017

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3K

40S ribosomal protein S13

Chain 3P

40S ribosomal protein S27