IL_8IFD_230

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GCG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCG,CGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_230 not in the Motif Atlas

Geometric match to IL_2H1M_002

Geometric discrepancy: 0.2259

The information below is about IL_2H1M_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8IFD|1|2m|G|1233
8IFD|1|2m|C|1234
8IFD|1|2m|G|1235
*
8IFD|1|2m|C|1523
8IFD|1|2m|G|1524
8IFD|1|2m|C|1525

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2w

40S ribosomal protein S15

Chain 2x

40S ribosomal protein S16

Chain 2z

40S ribosomal protein S18