IL_8IFD_232

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_232 not in the Motif Atlas

Homologous match to IL_4V88_446

Geometric discrepancy: 0.3017

The information below is about IL_4V88_446

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8IFD|1|2m|G|1270
8IFD|1|2m|C|1271
8IFD|1|2m|C|1272
*
8IFD|1|2m|G|1510
8IFD|1|2m|U|1511
8IFD|1|2m|C|1512

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2u

40S ribosomal protein S10

Chain 3E

40S ribosomal protein S29

Chain 3R

Ubiquitin-40S ribosomal protein S27a