IL_8IFD_240
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 8IFD|1|2m|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IFD_240 not in the Motif Atlas
- Geometric match to IL_6JDV_002
- Geometric discrepancy: 0.3989
- The information below is about IL_6JDV_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8IFD|1|2m|C|1395
8IFD|1|2m|A|1396
8IFD|1|2m|U|1397
8IFD|1|2m|G|1398
8IFD|1|2m|C|1399
*
8IFD|1|2m|G|1447
8IFD|1|2m|A|1448
8IFD|1|2m|G|1449
8IFD|1|2m|G|1450
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 21
- 40S ribosomal protein S20
- Chain 2x
- 40S ribosomal protein S16
- Chain 2y
- 40S ribosomal protein S17
- Chain 3F
- Receptor of activated protein C kinase 1
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