IL_8IFD_246

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_246 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1778

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

8IFD|1|2m|G|1604
8IFD|1|2m|G|1605
8IFD|1|2m|G|1606
8IFD|1|2m|A|1607
8IFD|1|2m|U|1608
8IFD|1|2m|C|1609
8IFD|1|2m|G|1610
*
8IFD|1|2m|C|1629
8IFD|1|2m|A|1630
8IFD|1|2m|U|1631
8IFD|1|2m|G|1632
8IFD|1|2m|A|1633
8IFD|1|2m|A|1634
8IFD|1|2m|C|1635

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 20

40S ribosomal protein S19

Chain 2z

40S ribosomal protein S18