IL_8IFD_248

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8IFD|1|2m|C|1701, 8IFD|1|2m|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFD_248 not in the Motif Atlas

Homologous match to IL_8C3A_470

Geometric discrepancy: 0.1644

The information below is about IL_8C3A_470

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8IFD|1|2m|C|1700
8IFD|1|2m|C|1701
8IFD|1|2m|G|1702
*
8IFD|1|2m|C|1833
8IFD|1|2m|A|1834
8IFD|1|2m|A|1835
8IFD|1|2m|G|1836

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3C

40S ribosomal protein S26