IL_8IFD_268
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- UGUG*UAGA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IFD_268 not in the Motif Atlas
- Homologous match to IL_8C3A_403
- Geometric discrepancy: 0.4521
- The information below is about IL_8C3A_403
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86374.1
- Basepair signature
- cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
8IFD|1|2m|U|152
8IFD|1|2m|G|153
8IFD|1|2m|U|154
8IFD|1|2m|G|155
*
8IFD|1|2m|U|163
8IFD|1|2m|A|164
8IFD|1|2m|G|165
8IFD|1|2m|A|166
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2Q
- 60S ribosomal protein L24
- Chain 3H
- 40S ribosomal protein S6
- Chain 3N
- 40S ribosomal protein S24
Coloring options: