IL_8IFD_270

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGGACAGGAUUGACAG*CUUUCUCGAUUCCG

Length

30 nucleotides

Bulged bases

8IFD|1|2m|G|1285, 8IFD|1|2m|C|1292, 8IFD|1|2m|A|1293, 8IFD|1|2m|U|1306, 8IFD|1|2m|U|1314, 8IFD|1|2m|U|1315

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|2m|C|1279
8IFD|1|2m|G|1280
8IFD|1|2m|G|1281
8IFD|1|2m|A|1282
8IFD|1|2m|C|1283
8IFD|1|2m|A|1284
8IFD|1|2m|G|1285
8IFD|1|2m|G|1286
8IFD|1|2m|A|1287
8IFD|1|2m|U|1288
8IFD|1|2m|U|1289
8IFD|1|2m|G|1290
8IFD|1|2m|A|1291
8IFD|1|2m|C|1292
8IFD|1|2m|A|1293
8IFD|1|2m|G|1294
*
8IFD|1|2m|C|1305
8IFD|1|2m|U|1306
8IFD|1|2m|U|1307
8IFD|1|2m|U|1308
8IFD|1|2m|C|1309
8IFD|1|2m|U|1310
8IFD|1|2m|C|1311
8IFD|1|2m|G|1312
8IFD|1|2m|A|1313
8IFD|1|2m|U|1314
8IFD|1|2m|U|1315
8IFD|1|2m|C|1316
8IFD|1|2m|C|1317
8IFD|1|2m|G|1318

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2u

40S ribosomal protein S10

Chain 2w

40S ribosomal protein S15

Chain 3E

40S ribosomal protein S29

Chain 3J

40S ribosomal protein S12

Chain 3R

Ubiquitin-40S ribosomal protein S27a