IL_8IFD_272

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

ACUAGUUACGCGACCCCC*GGCGUCCCCCAACUUCU

Length

35 nucleotides

Bulged bases

8IFD|1|2m|C|1403, 8IFD|1|2m|U|1404, 8IFD|1|2m|C|1416, 8IFD|1|2m|C|1418, 8IFD|1|2m|G|1431, 8IFD|1|2m|C|1436, 8IFD|1|2m|C|1437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|2m|A|1402
8IFD|1|2m|C|1403
8IFD|1|2m|U|1404
8IFD|1|2m|A|1405
8IFD|1|2m|G|1406
8IFD|1|2m|U|1407
8IFD|1|2m|U|1408
8IFD|1|2m|A|1409
8IFD|1|2m|C|1410
8IFD|1|2m|G|1411
8IFD|1|2m|C|1412
8IFD|1|2m|G|1413
8IFD|1|2m|A|1414
8IFD|1|2m|C|1415
8IFD|1|2m|C|1416
8IFD|1|2m|C|1417
8IFD|1|2m|C|1418
8IFD|1|2m|C|1419
*
8IFD|1|2m|G|1428
8IFD|1|2m|G|1429
8IFD|1|2m|C|1430
8IFD|1|2m|G|1431
8IFD|1|2m|U|1432
8IFD|1|2m|C|1433
8IFD|1|2m|C|1434
8IFD|1|2m|C|1435
8IFD|1|2m|C|1436
8IFD|1|2m|C|1437
8IFD|1|2m|A|1438
8IFD|1|2m|A|1439
8IFD|1|2m|C|1440
8IFD|1|2m|U|1441
8IFD|1|2m|U|1442
8IFD|1|2m|C|1443
8IFD|1|2m|U|1444

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 20

40S ribosomal protein S19

Chain 21

40S ribosomal protein S20

Chain 2p

40S ribosomal protein S3

Chain 2x

40S ribosomal protein S16