IL_8IFE_031

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

8IFE|1|1A|A|943, 8IFE|1|1A|A|944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_031 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.255

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

8IFE|1|1A|A|723
8IFE|1|1A|C|724
*
8IFE|1|1A|G|942
8IFE|1|1A|A|943
8IFE|1|1A|A|944
8IFE|1|1A|U|945

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1F

60S ribosomal protein L4

Chain 2A

60S ribosomal protein L7