IL_8IFE_048

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

8IFE|1|1A|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_048 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1864

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

8IFE|1|1A|G|1360
8IFE|1|1A|G|1361
*
8IFE|1|1A|C|1376
8IFE|1|1A|G|1377
8IFE|1|1A|C|1378
8IFE|1|1A|C|1379

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1F

60S ribosomal protein L4

Chain 2F

60S ribosomal protein L13

Chain 2H

60S ribosomal protein L15