IL_8IFE_049

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GGC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGC,GCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_049 not in the Motif Atlas

Geometric match to IL_6IA2_003

Geometric discrepancy: 0.2113

The information below is about IL_6IA2_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8IFE|1|1A|G|1403
8IFE|1|1A|G|1404
8IFE|1|1A|C|1405
*
8IFE|1|1A|G|1412
8IFE|1|1A|C|1413
8IFE|1|1A|C|1414

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2U

60S ribosomal protein L27a

Chain 2V

60S ribosomal protein L29