IL_8IFE_063

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UUU*AUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_063 not in the Motif Atlas

Homologous match to IL_8C3A_037

Geometric discrepancy: 0.0543

The information below is about IL_8C3A_037

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8IFE|1|1A|U|1671
8IFE|1|1A|U|1672
8IFE|1|1A|U|1673
*
8IFE|1|1A|A|1682
8IFE|1|1A|U|1683
8IFE|1|1A|A|1684

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2F

60S ribosomal protein L13

Chain 2K

60S ribosomal protein L18

Chain 2N

60S ribosomal protein L21

Chain 2U

60S ribosomal protein L27a

Chain 2V

60S ribosomal protein L29