IL_8IFE_066

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

8IFE|1|1A|G|1724

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_066 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.0898

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8IFE|1|1A|A|1723
8IFE|1|1A|G|1724
8IFE|1|1A|U|1725
*
8IFE|1|1A|A|1838
8IFE|1|1A|U|1839

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2A

60S ribosomal protein L7

Chain 2N

60S ribosomal protein L21

Chain 2V

60S ribosomal protein L29