IL_8IFE_078

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UGC*GG

Length

5 nucleotides

Bulged bases

8IFE|1|1A|G|1919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_078 not in the Motif Atlas

Geometric match to IL_7D7V_002

Geometric discrepancy: 0.3784

The information below is about IL_7D7V_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

8IFE|1|1A|U|1918
8IFE|1|1A|G|1919
8IFE|1|1A|C|1920
*
8IFE|1|1A|G|2063
8IFE|1|1A|G|2064

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2A

60S ribosomal protein L7

Chain 2I

60S ribosomal protein L13a

Chain 2M

60S ribosomal protein L18a

Chain 2Z

60S ribosomal protein L35a