IL_8IFE_083

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UAUAGACAGCAGG*CUGCCGAA

Length

21 nucleotides

Bulged bases

8IFE|1|1A|U|1959, 8IFE|1|1A|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFE|1|1A|U|1957
8IFE|1|1A|A|1958
8IFE|1|1A|U|1959
8IFE|1|1A|A|1960
8IFE|1|1A|G|1961
8IFE|1|1A|A|1962
8IFE|1|1A|C|1963
8IFE|1|1A|A|1964
8IFE|1|1A|G|1965
8IFE|1|1A|C|1966
8IFE|1|1A|A|1967
8IFE|1|1A|G|1968
8IFE|1|1A|G|1969
*
8IFE|1|1A|C|2019
8IFE|1|1A|U|2020
8IFE|1|1A|G|2021
8IFE|1|1A|C|2022
8IFE|1|1A|C|2023
8IFE|1|1A|G|2024
8IFE|1|1A|A|2025
8IFE|1|1A|A|2026

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2g

Ubiquitin-60S ribosomal protein L40