IL_8IFE_088

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

8IFE|1|1A|A|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_088 not in the Motif Atlas

Geometric match to IL_7RQB_033

Geometric discrepancy: 0.3139

The information below is about IL_7RQB_033

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

8IFE|1|1A|U|2312
8IFE|1|1A|A|2313
8IFE|1|1A|G|2314
*
8IFE|1|1A|C|2325
8IFE|1|1A|G|2326

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1C

5.8S ribosomal RNA; 5.8S rRNA

Chain 2Y

60S ribosomal protein L32