IL_8IFE_092

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_092 not in the Motif Atlas

Geometric match to IL_7RQB_058

Geometric discrepancy: 0.2191

The information below is about IL_7RQB_058

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

8IFE|1|1A|A|2477
8IFE|1|1A|C|2478
8IFE|1|1A|G|2479
*
8IFE|1|1A|C|2499
8IFE|1|1A|U|2500

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2R

60S ribosomal protein L23a