IL_8IFE_094

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CGAUGG*CGUUG

Length

11 nucleotides

Bulged bases

8IFE|1|1A|U|2485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFE|1|1A|C|2482
8IFE|1|1A|G|2483
8IFE|1|1A|A|2484
8IFE|1|1A|U|2485
8IFE|1|1A|G|2486
8IFE|1|1A|G|2487
*
8IFE|1|1A|C|2492
8IFE|1|1A|G|2493
8IFE|1|1A|U|2494
8IFE|1|1A|U|2495
8IFE|1|1A|G|2496

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1C

5.8S ribosomal RNA; 5.8S rRNA

Chain 2R

60S ribosomal protein L23a