IL_8IFE_120

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

8IFE|1|1A|A|3901, 8IFE|1|1A|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_120 not in the Motif Atlas

Homologous match to IL_5TBW_092

Geometric discrepancy: 0.0618

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8IFE|1|1A|G|3900
8IFE|1|1A|A|3901
8IFE|1|1A|A|3902
*
8IFE|1|1A|U|4558
8IFE|1|1A|A|4559
8IFE|1|1A|C|4560
8IFE|1|1A|C|4561

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2J

60S ribosomal protein L17