IL_8IFE_124

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

AGA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_124 not in the Motif Atlas

Homologous match to IL_8C3A_101

Geometric discrepancy: 0.2971

The information below is about IL_8C3A_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76273.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

8IFE|1|1A|A|3945
8IFE|1|1A|G|3946
8IFE|1|1A|A|3947
*
8IFE|1|1A|U|4066
8IFE|1|1A|U|4067
8IFE|1|1A|U|4068

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2c

60S ribosomal protein L36

Chain 2o

40S ribosomal protein S3a