IL_8IFE_128

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

8IFE|1|1A|A|4292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_128 not in the Motif Atlas

Geometric match to IL_5WWT_001

Geometric discrepancy: 0.2844

The information below is about IL_5WWT_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

8IFE|1|1A|G|4291
8IFE|1|1A|A|4292
8IFE|1|1A|U|4293
*
8IFE|1|1A|A|4317
8IFE|1|1A|C|4318

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2V

60S ribosomal protein L29

Chain 2i

60S ribosomal protein L36a