IL_8IFE_135

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_135 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.117

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8IFE|1|1A|C|4412
8IFE|1|1A|C|4413
8IFE|1|1A|A|4414
8IFE|1|1A|A|4415
8IFE|1|1A|G|4416
*
8IFE|1|1A|C|4426
8IFE|1|1A|G|4427
8IFE|1|1A|A|4428
8IFE|1|1A|C|4429
8IFE|1|1A|G|4430

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2D

60S ribosomal protein L10-like

Chain 2g

Ubiquitin-60S ribosomal protein L40