IL_8IFE_140

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

8IFE|1|1A|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IFE_140 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3977

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

8IFE|1|1A|U|4468
8IFE|1|1A|U|4469
8IFE|1|1A|G|4470
*
8IFE|1|1A|C|4485
8IFE|1|1A|C|4486
8IFE|1|1A|A|4487
8IFE|1|1A|A|4488
8IFE|1|1A|G|4489

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2C

60S ribosomal protein L9

Chain 2I

60S ribosomal protein L13a

Chain 2g

Ubiquitin-60S ribosomal protein L40