IL_8IFE_189
3D structure
- PDB id
- 8IFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- 8IFE|1|2m|U|368, 8IFE|1|2m|C|369
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IFE_189 not in the Motif Atlas
- Homologous match to IL_8C3A_411
- Geometric discrepancy: 0.3857
- The information below is about IL_8C3A_411
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71854.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8IFE|1|2m|U|366
8IFE|1|2m|U|367
8IFE|1|2m|U|368
8IFE|1|2m|C|369
8IFE|1|2m|G|370
8IFE|1|2m|A|371
*
8IFE|1|2m|U|393
8IFE|1|2m|G|394
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2L
- 60S ribosomal protein L19
- Chain 2t
- 40S ribosomal protein S8
- Chain 2v
- 40S ribosomal protein S11
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